Welcome to PopGenIE: The Populus Genome Integrative Explorer

PopGenIE facilitates the exploration of genes and gene function in Populus using a set of integrated tools providing access to as broad a base of community, publicly accessible genomics, genetics, and sequence data as possible. Feel free to contact us with comments, suggestions or questions.

If you make use of PopGenIE to contribute to publications please see out Citation guidelines.

Data Submission

We would welcome the submission of data to any of the PopGenIE tools. Please contact us and we will discuss how to best integrate your data set. We intend this to be a community resource that will act as a repository for data and that will grow and expand through community support. All community support will be fully and visibly acknowledged.

Latest news

Server restored

After a fatal breakdown the server is back up. Almost all tools have been restored with the exception of CoReg and the bulk annotation extraction tools. Annotation data can be downloaded from the ftp site (new location). Users of GBrowse will notice some differences because we have moved to GBrowse2.

We are interested to know which tools that have not been restored were actually being used - in particular the synteny browsers. For now we are concentrating efforts on new tools for a new version of PopGenIE based on the v2 genome assembly.

If you have problems please contact us. We apologise for the problems.

Primary links

Welcome to PopGenIE: The Populus Genome Integrative Explorer

Data Submission

Latest news